Handy CondaEnv instance constructor

Wrapper to create a CondaEnv object meant to store information about a single conda environment for a specific method. In most cases, it is best that the user favors CondaEnvManager-related functions.

Usage

CondaEnv(
  method = known.methods,
  conda.bin = NULL,
  conda.env.name = NULL,
  conda.env.path = NULL
)

Arguments

method

the method name. One of "combat", "harmony", "mnn", "bbknn", "scvi", "scanvi", "scanorama"

conda.bin

the path to the conda binary. If empty (""), NULL or "conda", "auto" is passed to conda_binary() to find the path to the conda binary in PATH

conda.env.name

name of the conda environment

conda.env.path

path to the conda environment

Value

a CondaEnv object

See also

CondaEnv