Manager of conda environments for python-based integration methods
Source:R/conda_S4_definitions.R
CondaEnvManager-class.RdThe CondaEnvManager class provides a handy way to set up, store and use
conda environments for python-based integration methods. It is designed to be
set up and modified via helper functions, not directly by the user.
Slots
combatCondaEnv. For R-based combat method, nothing to set up.
harmonyCondaEnv. For R-based harmony method, nothing to set up.
mnnCondaEnv. For R-based MNN method, nothing to set up.
bbknnCondaEnv. For python-based bbknn method.
scviCondaEnv. For python-based SCVI method. Can be shared with SCANVI.
scanviCondaEnv. For python-based SCANVI method. Can be shared with SCVI.
scanoramaCondaEnv. For python-based Scanorama method
trvaeCondaEnv. For python-based trVAE method